Significance of hydrogen burst from growing cultures of Desulfovibrio vulgaris,Miyazaki, and the role of hydrogenase and cytochrome c3 in energy production system

In an early stage of the growth of Desulfovibrio vulgaris, Miyazaki, a burst of H₂ occurred, and lasted for a few hours. The H₂S production which paralleled the cell proliferation was very low in the H₂ burst period, and began to increase thereafter. Hydrogenase (hydrogen: ferricytochrome c₃ oxidoreductase, EC1. 12.2.1), cytochrome c₃ and desulfoviridin also increased after the H₂ burst. These phenomena were common to all the cultural conditions tested, i.e., the cell growth is always preceded by the initial H₂ burst. Hydrogenase of cells harvested in the H₂ burst peroid was composed mainly of the high molecular weight species (mol. wt., 180,000), whereas that of the cells harvested later was composed of both the high molecular weight and the low molecular weight (mol. wt., 70,000) species. It was suggested that the former enzyme was acting as a catalyzer in the initial H₂ burst to effect the substrate level phosphorylation during the breakdown of lactate to acetate and CO₂, whereas the latter was induced by the H₂ produced by the cells themselves to recycle H₂ in order to supply electrons to the reducing system of sulfur oxy-acids coupled to electron transfer phosphorylation. The amount of cytochrome c₃ in cells harvested from an iron-deficient medium was as high as that in cells harvested from an iron-rich medium, suggesting the significance of this electron carrier in the cellular metabolism.     

Cholinergic constituents in plants: Characterization and distribution of acetylcholine and choline

Acetylcholine in plants was identified by gas chromatography/mass spectrometry. Acetylcholine was found in the following species from 13 families: Betula pendula, Codiaeum variegatum, Ilex opaca, Liquidambar styraciflua, Lonicera japonica, Phaseolus aureus, Phaseolus vulgaris, Pisum sativum, Plantago rugelli, Populus grandidentata, Prunus serotina, Rhus copallina, Smilax hispida, Viburnum dilatatum , and Zea mays . Levels of acetylcholine in leaves ranged from a low of 0.14 ± 0.05 (mean ± SEM) nmol (g fresh weight)⁻¹ in I. opaca to a high of 53 ± 6.6 nmol (g fresh weight)⁻¹ in P. aureus . Acetylcholine was found in all tissues examined regardless of the organ (leaves, stems, or roots) or developmental stage (seedlings, mature plants, or seeds). For P. aureus , continuous light exposure increased acetylcholine levels of leaves, and decreased levels in stem when compared to dark controls. Levels of choline, a precursor of acetylcholine, found in leaves ranged from a low of 84 ± 7.0 nmol (g fresh weight)⁻¹ in L. styraciflua to a high of 3700 ± 200 nmol (g fresh weight)⁻¹ in P. aureus . With these findings, three out of the four components of the cholinergic system have now been identified in plants.     

In silico metabolic engineering of Clostridium ljungdahlii for synthesis gas fermentation

Synthesis gas fermentation is one of the most promising routes to convert synthesis gas (syngas; mainly comprised of H₂ and CO) to renewable liquid fuels and chemicals by specialized bacteria. The most commonly studied syngas fermenting bacterium is Clostridium ljungdahlii, which produces acetate and ethanol as its primary metabolic byproducts. Engineering of C. ljungdahlii metabolism to overproduce ethanol, enhance the synthesize of the native byproducts lactate and 2,3-butanediol, and introduce the synthesis of non-native products such as butanol and butyrate has substantial commercial value. We performed in silico metabolic engineering studies using a genome-scale reconstruction of C. ljungdahlii metabolism and the OptKnock computational framework to identify gene knockouts that were predicted to enhance the synthesis of these native products and non-native products, introduced through insertion of the necessary heterologous pathways. The OptKnock derived strategies were often difficult to assess because increase product synthesis was invariably accompanied by decreased growth. Therefore, the OptKnock strategies were further evaluated using a spatiotemporal metabolic model of a syngas bubble column reactor, a popular technology for large-scale gas fermentation. Unlike flux balance analysis, the bubble column model accounted for the complex tradeoffs between increased product synthesis and reduced growth rates of engineered mutants within the spatially varying column environment. The two-stage methodology for deriving and evaluating metabolic engineering strategies was shown to yield new C. ljungdahlii gene targets that offer the potential for increased product synthesis under realistic syngas fermentation conditions.     

Climate change may alter genetic diversity of Duchesnea indica,a clonal plant species

Climate change may alter the genetic diversity of plants. However, the relationship between genetic diversity in clonal plant species and climate change is unclear. To address this, we examined a representative clonal plant species, Duchesnea indica. We used microsatellite markers to analyze the genetic diversity of the species and used a correlation analysis to infer the relationship between climatic suitability and genetic diversity by using Maxent modeling. Then, we used a geographical information system approach to evaluate the change in genetic diversity of D. indica under climate change scenarios. There was a significantly negative relationship between climatic suitability and the genetic diversity of the clonal plant species. Using a proxy of genetic diversity, we found that climate change may alter the genetic diversity and even lead to a reduction in regional genetic diversity in D. indica. Annual precipitation, in particular, contributes to these changes in genetic diversity. Hence, climatic factors can be used as indicators of genetic diversity for clonal plant species, and studies should examine the impact of climate change on the maintenance of genetic diversity in plant species.     

Stereochemical aspects of the biological oxidation of aryl isoprenoids. The asymmetric synthesis and absolute configuration of meranzin and of meranzin hydrate

The role of epoxides in the biological oxidation of aryl prenyl derivatives is discussed in terms of the stereochemistry of quinoline alkaloids and coumarins found in species of the Rutaceae and Umbelliferae. Asymmetric synthesis of the epoxide, meranzin and of the diol, meranzin hydrate, have been carried out and the absolute configurations of the two coumarins have been established.     

Decomposition of CH4 hydrate: effects of temperature and salt from molecular simulations

We report a molecular simulation study to investigate the decomposition of CH₄ hydrate. The decomposition is revealed to be stepwise from the outer to inner layers. Upon decomposition, the number of 5¹²6² cages drops faster than that of 5¹² cages. CH₄ molecules are released, dissolved in water, then enter gas phase; meanwhile, CH₄ bubbles may form particularly at a high temperature. Based on the variations of potential energy, order parameter, cage number and density profile of CH₄ at different temperatures (300, 330, 345 and 360 K) and NaCl concentrations (0, 0.6 and 1.8 M), the effects of temperature and salt are comprehensively examined. With increasing temperature, the decomposition in pure water is accelerated, whereas two opposite effects are observed in NaCl solution. At 330 K, the decomposition is retarded at a higher NaCl concentration, as attributed to the reduced CH₄ solubility in NaCl solution and the participation of ions in cage formation; at 360 K, however, the decomposition is accelerated when NaCl concentration increases due to bubble formation. This simulation study provides microscopic insights into hydrate decomposition, which might be useful towards the optimisation of operating conditions for CH₄ production from CH₄ hydrate.     

Oxygen solubility in evaporated seawater as a function of temperature and salinity

Most studies of oxygen solubility values for high salinity conditions have used synthetic solutions. The object of this study is therefore to propose an equation, valid for high salinity conditions, based on the analysis of oxygen saturation in evaporated seawater. In this study, the solubility of oxygen in evaporated seawater has been determined over a temperature range of 8–35°C and with salinity values of up to 133‰. Based on experimental data, an equation is proposed that introduces a S ² (salinity) term, at 1 atm pressure, giving increased importance to salinity. The equation provides a valid means of predicting the amount of dissolved oxygen in this range of temperatures and salinities. In addition, for high salinity conditions, with this equation there is no need to extrapolate other established equations, which are less accurate at salinities higher than 40‰. The use of the proposed equation offers a more precise way of calculating oxygen solubility in seawater at high salinity values (up to 133‰), and small deviations from experimental values, of the order of 2 μmol kg⁻¹, are obtained. Handling editor: J. Melack     

Synergistic effect of sodium butyrate and oxaliplatin on colorectal cancer

BackgroundOxaliplatin (OXA) is a chemotherapy agent commonly used in the treatment of colorectal cancer (CRC). Sodium butyrate (NaB) has an antitumor effect.MethodsIn total, 30 patients in stage III who completed 8 cycles of chemotherapy regimens were recruited for this study. The patients were divided into good and bad groups based on the chemotherapy efficacy. Gas chromatography–mass spectrometry (GC/MS) was used to detect microbial metabolites in stool samples from CRC patients. Cell counting kit-8 (CCK-8), Annexin-V APC/7-AAD double staining, Transwell assays, scratch-wound assays, and EdU assays were used to detect cell proliferation, apoptosis, invasion and migration, respectively. Fluoroelectron microscopy was used to observe the cell structures. To verify the inhibitory effect of NaB and OXA at animal level, a subcutaneous transplanted tumor model was established. Finally, 16S sequencing technology was used to detect intestinal bacteria. GC–MS was used to detect metabolites in mouse stools.ResultsNaB was a differential metabolite that affected the efficacy of OXA. NAB and oxaliplatin can synergically inhibit cell proliferation, migration and invasion, and induce cell apoptosis. Animal experiments confirmed the inhibitory effect of oxaliplatin and sodium butyrate on tumor in mice. In addition, the intestinal microbe detection and microbial metabolite detection in fecal samples from mice showed significant differences between butyrate-producing bacteria and NaB.ConclusionNaB and OXA can synergistically inhibit the proliferation, invasion and metastasis of CRC cells and promote the apoptosis of CRC cells. NaB, as an OXA synergist, has the potential to become a new clinical adjuvant in CRC chemotherapy.     

The role of seed provenance in the early development of Arbutus unedo seedlings under contrasting watering conditions

In the last decades, several studies have reported the increase of land degradation and desertification in the Mediterranean Basin. Depending on degradation severity, ecological restoration might be needed in order to promote ecosystem recovery. The ecology of the selected species and intra specific variability should be considered in order to improve restoration options, especially facing climate change.The present study tested the hypothesis that seedlings from drier provenances would be better adapted to low water content conditions. Seeds were germinated under controlled temperature after which seedlings were grown in a phytotron under two contrasting watering regimes. Seedling performance was analysed using morphological and physiological parameters.Low water content had a clear negative effect on the seedlings’ aboveground biomass (total dry weight, root collar diameter, leaf dry weight and leaf weight ratio) and a positive effect on belowground biomass (root weight and root:shoot ratio). This response was not unequivocal, since provenances differed in morphological adaptations to low water content. Seedlings from the wettest provenance revealed a higher relative growth rate under high water content but a poor adaptation to limited water availability when compared to the other two provenances. This was observed by the absence of a significant belowground investment in this provenance. Seedlings from the wettest provenance also presented a significant reduction of total leaf area that was not observed in the other two provenances. This can however be hardly considered as a successful adaptation to cope with drought since this provenance produced less sclerophyllous leaves, less belowground biomass and also lower sapwood to leaf area ratio independently from the water content conditions. By contrast, seedlings from the dry provenance with the hottest summer had similar root collar diameter, leaf dry weight and physiological performance under both watering regimes.The observed adaptations to water regimes seem to be related with the climate of the seed source and highlighted the importance of seed provenance in ecological restoration actions using Mediterranean species. This knowledge could improve early establishment success predictions for different plant populations, allowing more reliable and cost-effective management decisions under climate change scenarios.